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HPC Hackathon materials
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Workshop materials
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HPC
EHPCH_2021_8
Workshop materials
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PART 1: Basics of supercomputing
Select activity Ansible scripts for containers - UiT (ELIXIR-NO)
Ansible scripts for containers - UiT (ELIXIR-NO)
URL
Select activity Tutorial - High Performance Computing in Life Sciences - SIB (ELIXIR-CH)
Tutorial - High Performance Computing in Life Sciences - SIB (ELIXIR-CH)
URL
Select activity GitHub repository for the hackathon
GitHub repository for the hackathon
URL
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PART 1: Basics of supercomputing
Introduction
Using a cluster
Video processing
Test your knowledge
PART 2: Programming of graphic process units
Introduction
Graphic processing units
Introduction to OpenCL
GPU programming
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PART 1: Basics of supercomputing
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PART 1: Basics of supercomputing
Table of contents
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1
Link to the main course
ELIXIR HPC Hackathon 2021
Announcements
ELIXIR Short-Term Feedback SurveyDear hackathon at...
2
Workshop materials
Ansible scripts for containers - UiT (ELIXIR-NO)
Tutorial - High Performance Computing in Life Sciences - SIB (ELIXIR-CH)
GitHub repository for the hackathon
3
PART 1: Basics of supercomputing
About the courseUroš Lotrič, Davor Sluga, Timotej ...
4
Introduction
...
5
Using a cluster
Connecting to a cluster Software tools Interactive...
Log in to a cluster Run the command line, the sim...
Jobs and tasks in the Slurm systemUsers of compute...
Display cluster information Slurm provides a seri...
Starting jobs on a cluster In this chapter we wil...
Modules and containers Ordinary users (ie n...
6
Video processing
Basic video processing We will use the free...
Parallel video processing Many problems can be...
Use of graphical process units The graphics proce...
7
Test your knowledge
Exercise 1: Tools for working with a clustera) Reg...
Exercise 2: Cluster informationa) Print cluster in...
Exercise 3: Creating and running cluster jobs ...
Exercise 4: Video Processing In this exercise, we...
Exercise 5: Parallel video processing In this exe...
Exercise 6: Processing videos with containersIn th...
8
PART 2: Programming of graphic process units
About the coursePatricio Bulić, University of Ljub...
9
Introduction
Heterogeneous systemsA heterogeneous computer syst...
Anatomy of graphic process units To make it easie...
10
Graphic processing units
Nvidia Tesla K40 GPELet's look at the structure of...
Execution modelGraphical process units with a larg...
Memory hierarchyGPUs contain various memories that...
11
Introduction to OpenCL
OpenCLSo far, we have learned how the GPU is built...
Creating an OpenCL environment on the host We h...
12
GPU programming
Addition of vectors Let’s start with a simple e...
Scalar product of vectors Let’s try to pl...
Matrix multiplication We are now tackling a pro...
Image processing Edge enhancement is an image fil...
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