ELIXIR Norway: Using the Norwegian e-infrastructure for Life Science and usegalaxy.no

Section outline

• Select section Announcements and Communication tools

  Announcements and Communication tools

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  • Select activity Announcements

    

    Announcements Forum

    Only teachers can post here. Announcements are also e-mailed to course participants.

  • Select activity Discussion forum

    

    Discussion forum

    Students´ questions to teachers and other students are posted and answered here.

  • Select activity Chat room

    

    Chat room

    Live chat for comments and questions about the course.

  • Select activity Collaborative notes

    

    Collaborative notes URL
  • Select activity Zoom link to the event April 13.

    

    Zoom link to the event April 13. URL
  • Select activity ELIXIR Norway wiki

    

    ELIXIR Norway wiki URL
• Select section Introduction

  Introduction

  • Select activity Online course on using the Norwegian e-infrastruct...

    Online course on using the Norwegian e-infrastructure for Life Science (NeLS) and the national supported Galaxy (usegalaxy.no). The course will consist of lessons covering the necessary topics alternating with hands-on sessions to gain practical experience. It is organised by ELIXIR Norway.

    
    

    The topic is on how you can use NeLS to store and share data, and to run analyses via customisable analysis workflows in usegalaxy.no. You will practice on transferring data between NeLS and usegalaxy.no, and to construct and run a complete sequence analysis workflow in usegalaxy.no.

    
    

    Organisers:

    Kjell Petersen (UiB)

    Kjersti Rise (NTNU)

    Espen Åberg (UiT)

    Annbjørg Barbakken (UiO)

    Tina Visnovska (UiO)

    David Dolan (UiB)

    Erik Hjerde (UiT)

    
    
• Select section Useful links

  Useful links

  • Select activity ELIXIR Norway

    

    ELIXIR Norway URL
  • Select activity usegalaxy.no

    

    usegalaxy.no URL
  • Select activity The NeLS Portal

    

    The NeLS Portal URL
• Select section Video tutorials

  Video tutorials

  • Select activity Presentation of ELIXIR Norway

    

    Presentation of ELIXIR Norway File
  • Select activity Introduction lecture

    

    Introduction lecture File
  • Select activity NeLS data transfer lecture

    

    NeLS data transfer lecture File
  • Select activity NeLS and SBI

    

    NeLS and SBI File
  • Select activity Usegalaxy and NeLS

    

    Usegalaxy and NeLS File
  • Select activity Usegalaxy Tools and workflows

    

    Usegalaxy Tools and workflows File
  • Select activity Usegalaxy Trouble shooting

    

    Usegalaxy Trouble shooting File
• Select section Other learning materials

  Other learning materials
• Select section Agenda

  Agenda

  • Select activity Time    Topic09.00 - Lecture  &nbsp...

    Time    Topic

    09.00 - Lecture    Welcome and introduction. Introduction ELIXIR and NeLS

  • Select activity Introduction ELIXIR and NeLS

    

    Introduction ELIXIR and NeLS File
  • Select activity 9.30 - Practical: One hour to get all on board

    9.30 - Practical: One hour to get all on board
  • Select activity 10.00 - Lecture    NeLS: Data transfer a...

    10.00 - Lecture    NeLS: Data transfer and organization

  • Select activity NeLS Data transfer

    

    NeLS Data transfer File
  • Select activity 10.20 - Practical    Transfer data to an...

    10.20 - Practical    Transfer data to and from NeLS using web browser, FileZilla and command line

  • Select activity 10.50 - Coffee break   

    10.50 - Coffee break   

  • Select activity 11.15 - Lecture    NeLS and Storebionfo ...

    11.15 - Lecture    NeLS and Storebionfo - Projects and storage layers

  • Select activity NeLS_and_SBI_storage_projects_and_levels.pdf

    

    NeLS_and_SBI_storage_projects_and_levels.pdf File
  • Select activity 11.35  - Practical    Transfer...

    11.35  - Practical    Transfer of data between NeLS and SBI

  • Select activity 12.00 - Lunch

    12.00 - Lunch

  • Select activity 13.00 - Lecture    Introduction to usega...

    13.00 - Lecture    Introduction to usegalaxy.no and connection to NeLS

  • Select activity usegalaxy.no and connection to NeLS

    

    usegalaxy.no and connection to NeLS File
  • Select activity 13.30 - Practical    Logging in and data...

    13.30 - Practical    Logging in and data transfer between Galaxy and NeLS (both ways)

  • Select activity 14.00 - Lecture    Tools and workflows

    14.00 - Lecture    Tools and workflows

  • Select activity usegalaxy. no tools and workflows

    

    usegalaxy. no tools and workflows File
  • Select activity 14.30 - Practical    Compose and run a s...

    14.30 - Practical    Compose and run a simple workflow in usegalaxy.no

  • Select activity 15.00 - Lecture/Demo    Report issues an...

    15.00 - Lecture/Demo    Report issues and how to get help

  • Select activity Report issues and how to get help

    

    Report issues and how to get help File
  • Select activity 15.15 - Wrap up with questions and answers

    15.15 - Wrap up with questions and answers

  • Select activity 16.00 - END

    16.00 - END

• Select section A Survey

  A Survey

  Dear course user,
  we would be very happy if you can answer questions in this short survey. We believe that your feedback will help us to improve the course. The survey is anonymous.

  • Select activity Survey: Norwegian e-infrastructure for Life Science and Galaxy

    

    Survey: Norwegian e-infrastructure for Life Science and Galaxy Feedback