Course: ELIXIR Norway: Using the Norwegian e-infrastructure for Life Science and usegalaxy.no

Section outline

Select section Announcements and Communication tools

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Announcements and Communication tools

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- Select activity Announcements
  
  Announcements Forum
  
  Only teachers can post here. Announcements are also e-mailed to course participants.
- Select activity Discussion forum
  
  Discussion forum
  
  Students´ questions to teachers and other students are posted and answered here.
- Select activity Collaborative notes
  
  Collaborative notes URL
- Select activity Zoom link to the event April 13.
  
  Zoom link to the event April 13. URL
- Select activity ELIXIR Norway wiki
  
  ELIXIR Norway wiki URL
Select section Introduction

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Introduction
- Select activity Online course on using the Norwegian e-infrastruct...
  
  Online course on using the Norwegian e-infrastructure for Life Science (NeLS) and the national supported Galaxy (usegalaxy.no). The course will consist of lessons covering the necessary topics alternating with hands-on sessions to gain practical experience. It is organised by ELIXIR Norway.
  
  The topic is on how you can use NeLS to store and share data, and to run analyses via customisable analysis workflows in usegalaxy.no. You will practice on transferring data between NeLS and usegalaxy.no, and to construct and run a complete sequence analysis workflow in usegalaxy.no.
  
  Organisers:
  Kjell Petersen (UiB)
  Kjersti Rise (NTNU)
  Espen Åberg (UiT)
  Annbjørg Barbakken (UiO)
  Tina Visnovska (UiO)
  David Dolan (UiB)
  Erik Hjerde (UiT)
Select section Useful links

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Useful links
- Select activity ELIXIR Norway
  
  ELIXIR Norway URL
- Select activity usegalaxy.no
  
  usegalaxy.no URL
- Select activity The NeLS Portal
  
  The NeLS Portal URL
Select section Video tutorials

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Video tutorials
- Select activity Presentation of ELIXIR Norway
  
  Presentation of ELIXIR Norway File
- Select activity Introduction lecture
  
  Introduction lecture File
- Select activity NeLS data transfer lecture
  
  NeLS data transfer lecture File
- Select activity NeLS and SBI
  
  NeLS and SBI File
- Select activity Usegalaxy and NeLS
  
  Usegalaxy and NeLS File
- Select activity Usegalaxy Tools and workflows
  
  Usegalaxy Tools and workflows File
- Select activity Usegalaxy Trouble shooting
  
  Usegalaxy Trouble shooting File
Select section Other learning materials

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Other learning materials
Select section Agenda

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Agenda
- Select activity Time    Topic09.00 - Lecture  &nbsp...
  
  Time Topic
  09.00 - Lecture Welcome and introduction. Introduction ELIXIR and NeLS
- Select activity Introduction ELIXIR and NeLS
  
  Introduction ELIXIR and NeLS File
- Select activity 9.30 - Practical: One hour to get all on board
  
  9.30 - Practical: One hour to get all on board
- Select activity 10.00 - Lecture    NeLS: Data transfer a...
  
  10.00 - Lecture NeLS: Data transfer and organization
- Select activity NeLS Data transfer
  
  NeLS Data transfer File
- Select activity 10.20 - Practical    Transfer data to an...
  
  10.20 - Practical Transfer data to and from NeLS using web browser, FileZilla and command line
- Select activity 10.50 - Coffee break   
  
  10.50 - Coffee break
- Select activity 11.15 - Lecture    NeLS and Storebionfo ...
  
  11.15 - Lecture NeLS and Storebionfo - Projects and storage layers
- Select activity NeLS_and_SBI_storage_projects_and_levels.pdf
  
  NeLS_and_SBI_storage_projects_and_levels.pdf File
- Select activity 11.35  - Practical    Transfer...
  
  11.35 - Practical Transfer of data between NeLS and SBI
- Select activity 12.00 - Lunch
  
  12.00 - Lunch
- Select activity 13.00 - Lecture    Introduction to usega...
  
  13.00 - Lecture Introduction to usegalaxy.no and connection to NeLS
- Select activity usegalaxy.no and connection to NeLS
  
  usegalaxy.no and connection to NeLS File
- Select activity 13.30 - Practical    Logging in and data...
  
  13.30 - Practical Logging in and data transfer between Galaxy and NeLS (both ways)
- Select activity 14.00 - Lecture    Tools and workflows
  
  14.00 - Lecture Tools and workflows
- Select activity usegalaxy. no tools and workflows
  
  usegalaxy. no tools and workflows File
- Select activity 14.30 - Practical    Compose and run a s...
  
  14.30 - Practical Compose and run a simple workflow in usegalaxy.no
- Select activity 15.00 - Lecture/Demo    Report issues an...
  
  15.00 - Lecture/Demo Report issues and how to get help
- Select activity Report issues and how to get help
  
  Report issues and how to get help File
- Select activity 15.15 - Wrap up with questions and answers
  
  15.15 - Wrap up with questions and answers
- Select activity 16.00 - END
  
  16.00 - END
Select section A Survey

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A Survey
Dear course user,
we would be very happy if you can answer questions in this short survey. We believe that your feedback will help us to improve the course. The survey is anonymous.
- Select activity Survey: Norwegian e-infrastructure for Life Science and Galaxy
  
  Survey: Norwegian e-infrastructure for Life Science and Galaxy Feedback