Section: Day 1 - Monday, 26th November | Hands-on workshop in Marine Metagenomics

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Section outline

- Select activity 09:00 - 09:30 Round of presentation by participan...
  
  09:00 - 09:30
  
  Round of presentation by participants, Introduction to the virtual machines (VM) and practical exercises (Erik)
- Select activity Lecture: Crash course how to use EeLP
  
  Lecture: Crash course how to use EeLP File
  
  This slideshow presents EeLP features and explains how to use them.
- Select activity Lecture: Introduction the VM and practical exercises
  
  Lecture: Introduction the VM and practical exercises File
- Select activity Exercise: Introduction to the VM and practical exercises
  
  Exercise: Introduction to the VM and practical exercises File
- Select activity 09:30 - 10:15 Introduction to metagenomics (Nils)
  
  09:30 - 10:15
  
  Introduction to metagenomics (Nils)
- Select activity Lecture: Introduction to metagenomics
  
  Lecture: Introduction to metagenomics File
- Select activity 10:15 - 10:45 Coffee break
  
  10:15 - 10:45 Coffee break
- Select activity 10:45– 12:00 Introduction to Linux command line a...
  
  10:45– 12:00
  
  Introduction to Linux command line and Conda (Espen J)
- Select activity Lecture: Intro Linux and Anaconda
  
  Lecture: Intro Linux and Anaconda File
- Select activity Exercise: Intro Linux and Anconda
  
  Exercise: Intro Linux and Anconda File
- Select activity 12:00– 12:30 Sequencing technologies for metageno...
  
  12:00– 12:30
  
  Sequencing technologies for metagenomics (Espen S)
- Select activity Lecture: Seqtech
  
  Lecture: Seqtech File
- Select activity 12:30 – 13:30 Lunch
  
  12:30 – 13:30 Lunch
- Select activity 13:30 - 14:00 Quality control and trimming (Erik)
  
  13:30 - 14:00
  
  Quality control and trimming (Erik)
- Select activity Lecture: Quality control and trimming
  
  Lecture: Quality control and trimming File
- Select activity 14:00 - 14:30 Taxonomic classification using ampl...
  
  14:00 - 14:30
  
  Taxonomic classification using amplicon markers (Nils)
- Select activity Lecture: Community profiling - Amplicon sequencing
  
  Lecture: Community profiling - Amplicon sequencing File
- Select activity 14:30 - 18:00 Hands on - Amplicon data analysis u...
  
  14:30 - 18:00
  
  Hands on - Amplicon data analysis using Qiime2 / MicrobiomeAnalyst
- Select activity Exercise: Amplicon data analysis using Qiime2
  
  Exercise: Amplicon data analysis using Qiime2 File
- Select activity Exercise: Visualization of amplicon data using MicrobiomeAnalyst
  
  Exercise: Visualization of amplicon data using MicrobiomeAnalyst File
- Select activity Visualization of amplicon data with MicrobiomeAnalyst - example of results
  
  Visualization of amplicon data with MicrobiomeAnalyst - example of results Folder
- Select activity 15:00 - 15:30 Cofee break
  
  15:00 - 15:30 Cofee break
- Select activity 18:00 Dinner - Science Park
  
  18:00 Dinner - Science Park

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Hands-on workshop in Marine Metagenomics: Day 1 - Monday, 26th November

Section outline

Table of contents

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Hands-on workshop in Marine Metagenomics: Day 1 - Monday, 26th November

Section outline

Table of contents