ELIXIR Norway
Courses tagged with "ELIXIR Norway"
ELIXIR Norway: Using the Norwegian e-infrastructure for Life Science and usegalaxy.no 2022
Online course on using the Norwegian e-infrastructure for Life Science (NeLS) and the national supported Galaxy (usegalaxy.no). The course will consist of lessons covering the necessary topics alternating with hands-on sessions to gain practical experience. It is organised by ELIXIR Norway (https://www.elixir-norway.org/).
The topic is on how you can use NeLS (nels.bioinfo.no) to store and share data, and to run analyses via customisable analysis workflows in usegalaxy.no. You will practice on transferring data between NeLS and usegalaxy.no, and to construct and run a complete sequence analysis workflow in usegalaxy.no.
Organisers:
- Dorota Buczek (UiT)
- Jon K. Lærdahl (UiO)
- To Thu-Hien (NMBU)
- Tina Visnovska (UiO)
- Nazeefa Fatima (UiO)
- Erik Hjerde (UiT)
Course agenda
Day 1 Topic
12.00 - Lecture Welcome and introduction. Introduction ELIXIR and NeLS12.30 - Practical: One hour to get all on board
13.00 - Lecture NeLS: Data transfer and organization
13.20 - Practical Transfer data to and from NeLS using web browser, FileZilla and command line
13.50 - Coffee break
14.15 - Lecture NeLS and Storebionfo - Projects and storage layers
14.35 - Practical Transfer of data between NeLS and SBI
15.00 - End
Day 2 Topic
12.00 - Lecture Introduction to usegalaxy.no and connection to NeLS
12.20 - Practical Logging in and data transfer between Galaxy and NeLS (both ways)
13.00 - Coffee break
13.10 - Lecture Tools and workflows
13.40 - Practical Compose and run a simple workflow in usegalaxy.no
14.30 - Lecture/Demo Report issues and how to get help
14.45 - Wrap up with questions and answers
15.00 - END
- Teacher: Dorota Julia Buczek
- Teacher: Nazeefa Fatima
- Teacher: Erik Hjerde
- Teacher: Jon Kristen Lærdahl
- Teacher: Thu-Hien To
- Teacher: Tina Visnovska
- Enrolled students: 26
Importing
- Teacher: Erik Hjerde
- Enrolled students: There are no students enrolled in this course.
ELIXIR Norway: Using the Norwegian e-infrastructure for Life Science and usegalaxy.no
Online course on using the Norwegian e-infrastructure for Life Science (NeLS) and the national supported Galaxy (usegalaxy.no). The course will consist of lessons covering the necessary topics alternating with hands-on sessions to gain practical experience. It is organised by ELIXIR Norway (https://www.elixir-norway.org/).
The topic is on how you can use NeLS (nels.bioinfo.no) to store and share data, and to run analyses via customisable analysis workflows in usegalaxy.no. You will practice on transferring data between NeLS and usegalaxy.no, and to construct and run a complete sequence analysis workflow in usegalaxy.no.
Organisers:
Kjell Petersen (UiB)
Kjersti Rise (NTNU)
Espen Åberg (UiT)
Annbjørg Barbakken (UiO)
Tina Visnovska (UiO)
David Dolan (UiB)
Erik Hjerde (UiT)
- Teacher: Espen Åberg
- Teacher: Annbjørg Barbakken
- Teacher: David Dolan
- Teacher: Erik Hjerde
- Teacher: Kjell Petersen
- Teacher: Kjersti Rise
- Teacher: Tina Visnovska
- Enrolled students: 44
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Time: Friday 21st February, 09:00-15:30
Place: University of Tromsø, Medisin og helsefagbygget: Undervisningsrom (U.09.309)
Format: Bring your laptop!!!
You can register for the course by following this link .
We are pleased to announce the first Data Management workshop for Life Science projects organised in Tromsø by ELIXIR Norway . The topic is on how you can generate a data management plan for a research project that will meet the requirements of the funding organisations. You will get the opportunity to set up a data management plan for your project using the ELIXIR Norway Data Steward Wizard (DSW) tool. DSW is more flexible and provides more domain specific templates than the easyDMP offered by Uninett/Sigma2.
Course content:
- Requirements from the funding bodies and legal requirements
- Licensing of data, biological material and software
- Information on national and local storage infrastructures
- Relevant deposition repositories (data archives)
- Hands on training and assistance to generate a data management plan
Requirements:
- Bring your laptop
- Optionally you can also bring your research project (if you have one)
The intended audience are researchers (PhD candidates, post doctoral fellows, researchers, Associate Professor, professor) that are planning to submit a grant application for a research project.
Teachers:
- Korbinian Bösl
- Erik Hjerde
- Nils Peder Willassen
- Teacher: Korbinian Bösl
- Teacher: Lars Figenschou
- Teacher: Erik Hjerde
- Teacher: Erik Axel Vollan
- Teacher: Nils-Peder Willassen
- Enrolled students: 32
ELIXIR Norway: Hands-on bioinformatics NeLS workshop
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University of Tromsø
Medisin og helsefagbygget: Datarom (U7.110)
Tuesday 26th November 09.00-15.00
We are pleased to announce the second hands-on bioinformatics NeLS workshop organised in Tromsø by ELIXIR Norway (https://www.elixir-norway.org/). The topic is on how you can use the Norwegian e-Infrastructure for Life Sciences (NeLS) (nels.bioinfo.no) to store and share data, and to run analyses via customisable analysis workflows in Galaxy. More specifically, we will go through how you can store data in NeLS and upload it directly into Galaxy. We will also construct and run a complete sequence analysis workflow for taxonomic profiling on a metagenomic sample. There are no requirements for programming skills or experience using the command line, as Galaxy provides a web interface for running analysis.
Teachers:
Erik Hjerde, University of Tromsø
Ståle Nygård, University of Oslo
Nils Peder Willassen, University of Tromsø
- Teacher: Erik Hjerde
- Teacher: Ståle Nygård
- Teacher: Nils-Peder Willassen
- Enrolled students: 29
Hands-on workshop in Marine Metagenomics
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26-30 Nov 2018, Tromsø, NO
ELIXIR Norway in cooperation with ELIXIR Slovenia is pleased to announce the first Hands-on workshop in Marine Metagenomics
The aim of the workshop is to introduce the participants to the research field of metagenomics with focus on samples from the marine environment. The theoretical part for each subject will be introduced via lectures, followed by a practical Hands-on session.
Place: The Arctic University of Norway, each day from 09.00 until 16.00
Target audience: Researchers and students above bachelor level
Prerequisite: None, but study or research interest in metagenomics is expected
COURSE FEE: € 250,-
Deadline for application 1st Nov 2018
The maximum number of participants is 20. If the interest for the course is greater than this, we will select participants based on a geographical distribution and on how relevant the workshop will be to the participant.
- Teacher: Espen Åberg
- Teacher: Erik Hjerde
- Teacher: Espen Robertsen
- Teacher: Nils-Peder Willassen
- Enrolled students: 24