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  6. Parallel model exploration for tumor treatment sim...

Parallel model exploration for tumor treatment simulations

Click on Parallel model exploration for tumor treatment simulations to open the resource.
PreviousModeling signaling pathways in biology with MaBoSS: From one single cell to a dynamic population of heterogeneous interacting cells
NextOptimizing Dosage-Specific Treatments in a Multi-Scale Model of a Tumor Growth

Table of contents

  • PhysiBoSS repositoriesPhysiBoSS repositories
  • PhysiBoSS on bio.toolsPhysiBoSS on bio.tools
  • PhysiCell: Windows, UNIX, MacOSPhysiCell: Windows, UNIX, MacOS
  • MaBoSS: Windows, UNIX, MacOSMaBoSS: Windows, UNIX, MacOS
  • Downstream analysis of results 1: Windows, UNIX, MacOSDownstream analysis of results 1: Windows, UNIX, MacOS
  • Downstream analysis of results 2: Windows, UNIX, MacOSDownstream analysis of results 2: Windows, UNIX, MacOS
  • Command line (mac, linux, windows) 1Command line (mac, linux, windows) 1
  • Command line (mac, linux, windows) 2Command line (mac, linux, windows) 2
  • C++ programing language + compilingC++ programing language + compiling
  • Recommended: basics of Slurm or some other job submission system (for HPC version)Recommended: basics of Slurm or some other job submission system (for HPC version)
  • Basic XML syntax for setting filesBasic XML syntax for setting files
  • Scripting language (matlab/python) for postprocessing outputs 1Scripting language (matlab/python) for postprocessing outputs 1
  • Scripting language (matlab/python) for postprocessing outputs 2Scripting language (matlab/python) for postprocessing outputs 2
  • PhysiBoSS: a multi-scale agent-based modelling framework integrating physical dimension and cell signallingPhysiBoSS: a multi-scale agent-based modelling framework integrating physical dimension and cell signalling
  • PhysiBoSS 2.0: a sustainable integration of stochastic Boolean and agent-based modelling frameworksPhysiBoSS 2.0: a sustainable integration of stochastic Boolean and agent-based modelling frameworks
  • Multiscale model of the different modes of cancer cell invasionMultiscale model of the different modes of cancer cell invasion
  • Modeling signaling pathways in biology with MaBoSS: From one single cell to a dynamic population of heterogeneous interacting cellsModeling signaling pathways in biology with MaBoSS: From one single cell to a dynamic population of heterogeneous interacting cells
  • Parallel model exploration for tumor treatment simulationsParallel model exploration for tumor treatment simulations
  • Optimizing Dosage-Specific Treatments in a Multi-Scale Model of a Tumor GrowthOptimizing Dosage-Specific Treatments in a Multi-Scale Model of a Tumor Growth
  • PhysiCell tutorialsPhysiCell tutorials
  • PhysiCell Summer School 2021PhysiCell Summer School 2021
  • PhysiCell Summer School 2022PhysiCell Summer School 2022
  • PhysiCell Youtube ChannelPhysiCell Youtube Channel
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            • URLMultiscale model of the different modes of cancer cell invasion

            • URLModeling signaling pathways in biology with MaBoSS: From one single cell to a dynamic population of heterogeneous interacting cells

            • URLParallel model exploration for tumor treatment simulations

            • URLOptimizing Dosage-Specific Treatments in a Multi-Scale Model of a Tumor Growth

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