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PhysiBoSS

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  5. Prior Knowledge needed for this tool:
  6. Scripting language (matlab/python) for postprocess...

Scripting language (matlab/python) for postprocessing outputs 2

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PreviousScripting language (matlab/python) for postprocessing outputs 1
NextPhysiBoSS: a multi-scale agent-based modelling framework integrating physical dimension and cell signalling

Table of contents

  • PhysiBoSS repositoriesPhysiBoSS repositories
  • PhysiBoSS on bio.toolsPhysiBoSS on bio.tools
  • PhysiCell: Windows, UNIX, MacOSPhysiCell: Windows, UNIX, MacOS
  • MaBoSS: Windows, UNIX, MacOSMaBoSS: Windows, UNIX, MacOS
  • Downstream analysis of results 1: Windows, UNIX, MacOSDownstream analysis of results 1: Windows, UNIX, MacOS
  • Downstream analysis of results 2: Windows, UNIX, MacOSDownstream analysis of results 2: Windows, UNIX, MacOS
  • Command line (mac, linux, windows) 1Command line (mac, linux, windows) 1
  • Command line (mac, linux, windows) 2Command line (mac, linux, windows) 2
  • C++ programing language + compilingC++ programing language + compiling
  • Recommended: basics of Slurm or some other job submission system (for HPC version)Recommended: basics of Slurm or some other job submission system (for HPC version)
  • Basic XML syntax for setting filesBasic XML syntax for setting files
  • Scripting language (matlab/python) for postprocessing outputs 1Scripting language (matlab/python) for postprocessing outputs 1
  • Scripting language (matlab/python) for postprocessing outputs 2Scripting language (matlab/python) for postprocessing outputs 2
  • PhysiBoSS: a multi-scale agent-based modelling framework integrating physical dimension and cell signallingPhysiBoSS: a multi-scale agent-based modelling framework integrating physical dimension and cell signalling
  • PhysiBoSS 2.0: a sustainable integration of stochastic Boolean and agent-based modelling frameworksPhysiBoSS 2.0: a sustainable integration of stochastic Boolean and agent-based modelling frameworks
  • Multiscale model of the different modes of cancer cell invasionMultiscale model of the different modes of cancer cell invasion
  • Modeling signaling pathways in biology with MaBoSS: From one single cell to a dynamic population of heterogeneous interacting cellsModeling signaling pathways in biology with MaBoSS: From one single cell to a dynamic population of heterogeneous interacting cells
  • Parallel model exploration for tumor treatment simulationsParallel model exploration for tumor treatment simulations
  • Optimizing Dosage-Specific Treatments in a Multi-Scale Model of a Tumor GrowthOptimizing Dosage-Specific Treatments in a Multi-Scale Model of a Tumor Growth
  • PhysiCell tutorialsPhysiCell tutorials
  • PhysiCell Summer School 2021PhysiCell Summer School 2021
  • PhysiCell Summer School 2022PhysiCell Summer School 2022
  • PhysiCell Youtube ChannelPhysiCell Youtube Channel
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          • Prior Knowledge needed for this tool:

            • URLCommand line (mac, linux, windows) 1

            • URLCommand line (mac, linux, windows) 2

            • URLC++ programing language + compiling

            • URLRecommended: basics of Slurm or some other job submission system (for HPC version)

            • URLBasic XML syntax for setting files

            • URLScripting language (matlab/python) for postprocessing outputs 1

            • URLScripting language (matlab/python) for postprocessing outputs 2

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