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How to install and deploy Beacon

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Script to parse VCFs

This script generates 3 output files:

  • list of variants,
  • list of samples,
  • list of samples where each variant can be found.
Click https://raw.githubusercontent.com/ga4gh-beacon/beacon-elixir/v1.0.1/elixir_beacon/src/main/resources/META-INF/vcf_parser.sh link to open resource.
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Table of contents
  • AnnouncementsAnnouncements
  • Discussion forumDiscussion forum
  • Chat roomChat room
  • Introduction ELIXIR Beacon (Juha Tornroos, ELIXIR-FI)Introduction ELIXIR Beacon (Juha Tornroos, ELIXIR-FI)
  • Adding AAI functionality to your Beacon implementation (Juha Tornroos, ELIXIR-FI)Adding AAI functionality to your Beacon implementation (Juha Tornroos, ELIXIR-FI)
  • ELIXIR Beacons Network (Draft Model and API considerations) (Jordi Rambla and Sabela de la Torre, ELIXIR-ES)ELIXIR Beacons Network (Draft Model and API considerations) (Jordi Rambla and Sabela de la Torre, ELIXIR-ES)
  • How to install and deploy Beacon v0.4 - Short instructions (Sabela de la Torre, ELIXIR-ES)How to install and deploy Beacon v0.4 - Short instructions (Sabela de la Torre, ELIXIR-ES)
  • How to install and deploy Beacon v0.4 - Tutorial video (Sabela de la Torre, ELIXIR-ES)How to install and deploy Beacon v0.4 - Tutorial video (Sabela de la Torre, ELIXIR-ES)
  • How to install and deploy Beacon - More detailed instructions (Sabela de la Torre, ELIXIR-ES)How to install and deploy Beacon - More detailed instructions (Sabela de la Torre, ELIXIR-ES)
  • Database: DiagramDatabase: Diagram
  • SchemaSchema
  • FunctionFunction
  • Script to parse VCFsScript to parse VCFs
  • How to load the databaseHow to load the database
  • CompilationCompilation
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