CellNOpt

Section outline

• Izberi poglavje CellNOpt

  CellNOpt

  Skrči vse Razširi vse

  • Izberi aktivnost Welcome to CellNOpt course! Here you can find many...

    

    Welcome to CellNOpt course! Here you can find many useful links that will help you master the use of CellNOpt.

    
    
• Izberi poglavje Tool repositories

  Tool repositories

  A link to tool repository / repositories

  • Izberi aktivnost CellNOpt repositories

    

    CellNOpt repositories URL
  • Izberi aktivnost CellNOpt on bio.tools

    

    CellNOpt on bio.tools URL
• Izberi poglavje Tools platforms/specifics

  Tools platforms/specifics

  • Izberi aktivnost See https://www.bioconductor.org/packages/release/...

    See https://www.bioconductor.org/packages/release/bioc/html/CellNOptR.html: Any OS supported by R

• Izberi poglavje Prior Knowledge needed for this tool:

  Prior Knowledge needed for this tool:

  Dear participant!

  If this is your firs time working with CellNOpt we suggest you start here. We have collected some links to tutorials that will help you gain basic knowledge needed for this tool.

  • Izberi aktivnost Basic knowledge of Rhttps://datacarpentry.org/R-ec...

    • Basic knowledge of R
      • https://datacarpentry.org/R-ecology-lesson/01-intro-to-r.html
      • http://swcarpentry.github.io/r-novice-inflammation/
      • http://al2na.github.io/compgenr/
        
    • Data processing and normalization methods for proteomics/phosphoproteomics
      • https://www.bioconductor.org/packages/release/data/experiment/vignettes/RforProteomics/inst/doc/RforProteomics.html
      • https://www.ebi.ac.uk/training/online/courses/methods-in-bioinformatics/discovering-biological-information-from-mass-spectrometry-based-proteomics/
      • https://www.ebi.ac.uk/training/materials/proteomics-bioinformatics-materials/protein-quantification/quantitative-proteomics-kathryn-lilley/
        
    • Basic understanding of signalling networks (graphs including activation and inhibitions)
      
  • Izberi aktivnost MIDAS format file for the experiments (how to create the input files in the right format)

    

    MIDAS format file for the experiments (how to create the input files in the right format) URL
• Izberi poglavje Tutorials & resources:

  Tutorials & resources:

  Here you can find our recommended tutorials and resources for CellNOpt.

  • Izberi aktivnost Cellnopt tutorial step by step with toy data

    

    Cellnopt tutorial step by step with toy data URL
  • Izberi aktivnost R Vignette with more information of how to use it step by step

    

    R Vignette with more information of how to use it step by step URL
  • Izberi aktivnost A step by step usage of CellNopt for drug prediction

    

    A step by step usage of CellNopt for drug prediction URL
  • Izberi aktivnost CellNOpt / CARNIVAL

    CellNOpt / CARNIVAL

    
    
  • Izberi aktivnost Logic modelling of signalling networks – CellNOpt ...

    Logic modelling of signalling networks – CellNOpt and CARNIVAL
  • Izberi aktivnost Oznaka