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PhysiBoSS
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Courses
Learning Pathways
PhysiBoSS
Tutorials & resources:
PhysiCell Summer School 2022
PhysiCell Summer School 2022
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PhysiCell Summer School 2022
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PhysiCell Summer School 2021
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PhysiCell Youtube Channel
Table of contents
Tool repositories
PhysiBoSS repositories
PhysiBoSS on bio.tools
Tools platforms/specifics
PhysiCell: Windows, UNIX, MacOS
MaBoSS: Windows, UNIX, MacOS
Downstream analysis of results 1: Windows, UNIX, MacOS
Downstream analysis of results 2: Windows, UNIX, MacOS
Prior Knowledge needed for this tool:
Command line (mac, linux, windows) 1
Command line (mac, linux, windows) 2
C++ programing language + compiling
Recommended: basics of Slurm or some other job submission system (for HPC version)
Basic XML syntax for setting files
Scripting language (matlab/python) for postprocessing outputs 1
Scripting language (matlab/python) for postprocessing outputs 2
Publications
PhysiBoSS: a multi-scale agent-based modelling framework integrating physical dimension and cell signalling
PhysiBoSS 2.0: a sustainable integration of stochastic Boolean and agent-based modelling frameworks
Related publications
Multiscale model of the different modes of cancer cell invasion
Modeling signaling pathways in biology with MaBoSS: From one single cell to a dynamic population of heterogeneous interacting cells
Parallel model exploration for tumor treatment simulations
Optimizing Dosage-Specific Treatments in a Multi-Scale Model of a Tumor Growth
Tutorials & resources:
PhysiCell tutorials
PhysiCell Summer School 2021
PhysiCell Summer School 2022
PhysiCell Youtube Channel
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