Welcome to COBREXA course! Here you can find many useful links that will help you master the use of COBREXA.
A metabolic modeling at scale.
COBREXA.jl is a package for COnstraint Based Reconstruction and EXascale Analysis, designed for researchers interested in metabolic modeling. Using constrained models, COBREXA includes algorithms such as finding optimal balanced fluxes involved in metabolism, and discovering the limits of known metabolic networks. As a distinctive feature, COBREXA.jl is highly parallelizable, allowing users to employ high-performance computing resources to speed up their analysis. The design allows it to scale to exascale supercomputer systems, which can perform as many as 10^18 floating point operations per second.
Running COBREXA.jl requires basic knowledge of writing scripts. Algorithms model metabolic pathways, requiring some understanding of the underlying biological processes and terminology. A rich source of examples is available to get you started.
Accelerating the analysis: For accelerating the analysis using high-performance computing, users should have basic familiarity with working in the command line, and have access to a supercomputing environment.